Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs77715779 chr10:131989268 C/G 0 174 25.53 24.12 3.17 KM Plot
PCPG rs7776606 chr7:6634415 T/G 0.00014 172 17.62 24.7 25.4 KM Plot
PCPG rs77768890 chr12:56725121 A/G 1.01E-7 177 25.35 29.13 0.8 KM Plot
PCPG rs7776895 chr7:158666809 C/A 0 177 25.53 20.37 3.17 KM Plot
PCPG rs77793405 chr2:118702659 C/T 1.6E-5 178 25.17 30.93 11.65 KM Plot
PCPG rs77809998 chr16:71430687 C/T 0.000204 172 24.85 26.43 43.12 KM Plot
PCPG rs7781743 chr7:6627572 C/T 0.000108 175 17.62 24.85 25.4 KM Plot
PCPG rs77830819 chr2:118535545 A/T 1.57E-5 178 25 30.93 11.65 KM Plot
PCPG rs77847775 chr16:89896243 C/T 0.000207 171 25.87 21.5 36.37 KM Plot
PCPG rs77853814 chr12:56687572 G/T 9.63E-8 178 25.35 27.33 0.8 KM Plot
PCPG rs7790987 chr7:158866044 A/G 0 175 25.4 41.8 3.17 KM Plot
PCPG rs77949663 chr2:118547289 G/A 1.91E-5 176 25.47 28.45 11.65 KM Plot
PCPG rs77949691 chr22:50218299 G/C 0.000157 177 25.67 23.88 15.18 KM Plot
PCPG rs78001663 chr16:89896331 C/A 0.000207 171 25.87 21.5 36.37 KM Plot
PCPG rs7802242 chr7:158671751 C/T 0 177 25.53 20.37 3.17 KM Plot